Orientation of flanking sequences neighboring to insertions in long reads

IJMS, Free Full-Text

Targeted Long‐Read Sequencing Identifies a Retrotransposon Insertion as a Cause of Altered GNAS Exon A/B Methylation in a Family With Autosomal Dominant Pseudohypoparathyroidism Type 1b (PHP1B) - Miller - 2022 - Journal

Mechanisms of insertions at a DNA double-strand break - ScienceDirect

Strand-seq identifies contig orientation errors in the mouse reference

IJMS, Free Full-Text

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise - Peona - 2021 - Molecular Ecology Resources - Wiley Online Library

Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber

Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen

A pipeline for complete characterization of complex germline rearrangements from long DNA reads, Genome Medicine

A survey of algorithms for the detection of genomic structural variants from long-read sequencing data

Resolution of structural variation in diverse mouse genomes reveals chromatin remodeling due to transposable elements - ScienceDirect

Identification of errors in draft genome assemblies at single-nucleotide resolution for quality assessment and improvement

Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis, BMC Genomics

Development of a Novel Detection Method Targeting an Ultrashort 25 bp Sequence Found in Agrobacterium-Mediated Transformed GM Plants

Life, Free Full-Text